Match details
Record ID: |
OP262751.1 |
Database: |
nt |
Go to original record |
Description: |
Brandisia hancei x Brandisia discolor isolate NE 3 voucher KUN:ChenZ-016 plastid, complete genome. |
Taxon: |
Brandisia hancei x Brandisia discolor |
Original size: |
154604 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47112 |
47666 |
+ |
555 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaagaaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201 aaatggagtt gattgcgctg gtagaggaat gaaacttcag aaaggatgaa
251 ggataaacgt atctattgaa tactatatca aaatggttga ttaatgatgg
301 cccgaatctg tatctgtatt tttgaatacg aaaaatggaa gaattggtgt
351 gaattgattc catattgaag aaagaatatt cattcatcaa atcattcact
401 ccatagtccg atagatcttt taaagaactg attaatcgga cgagaataaa
451 gatagagtcc cattctacat gtcaataccg gcaacaatga aatttatagt
501 aagaggaaaa tccgtcgact ttttaaatcg tgagggttca agtccctcta
551 tcccc
View other 7 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.50e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
555 |
536 |
2.50e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.