Match details
Record ID: |
OP262748.1 |
Database: |
nt |
Go to original record |
Description: |
Brandisia swinglei isolate 4 voucher KUN:ChenZ-011 plastid, complete genome. |
Taxon: |
Brandisia swinglei |
Original size: |
155391 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47740 |
48295 |
+ |
556 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaagaaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa aaaagggata ggtgcagaga ctcaatggaa gctgttctaa
201 caaatggagt tgattgcgct ggtagaggaa tgaaacttca gaaaggatga
251 aggataaacg tatctattga atactatatc aaaatggttg attaatgatg
301 gcccgaatct gtatctgtat ttttgaatac gaaaaatgga agaattggtg
351 tgaattgatt ccatattgaa gaaagaatat tcattcatca aatcattcac
401 tccatagtcc gatagatctt ttaaagaact gattaatcgg acgagaataa
451 agatagagtc ccattctaca tgtcaatacc ggcaacaatg aaatttatag
501 taagaggaaa atccgtcgac tttcaaaatc gtgagggttc aagtccctct
551 atcccc
View other 13 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.50e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
556 |
537 |
2.50e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.