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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP262721.1 nt Brandisia hancei isolate CY voucher... 154608 bp Brandisia hancei QL-PLN-00-007 555 bp View
OP262722.1 nt Brandisia hancei isolate EM voucher... 154586 bp Brandisia hancei QL-PLN-00-007 555 bp View
OP262723.1 nt Brandisia hancei isolate GD voucher... 154607 bp Brandisia hancei QL-PLN-00-007 555 bp View
OP262724.1 nt Brandisia hancei isolate KM 1 vouch... 154609 bp Brandisia hancei QL-PLN-00-007 555 bp View
OP262725.1 nt Brandisia hancei isolate KM 2 vouch... 154609 bp Brandisia hancei QL-PLN-00-007 555 bp View
OP262726.1 nt Brandisia hancei isolate LL 1 vouch... 155187 bp Brandisia hancei QL-PLN-00-007 555 bp View
OP262727.1 nt Brandisia hancei isolate LL 2 vouch... 154605 bp Brandisia hancei QL-PLN-00-007 555 bp View
OP262728.1 nt Brandisia hancei isolate NE 1 vouch... 154604 bp Brandisia hancei QL-PLN-00-007 555 bp View
OP262729.1 nt Brandisia hancei isolate NE 2 vouch... 154604 bp Brandisia hancei QL-PLN-00-007 555 bp View
OP262730.1 nt Brandisia hancei isolate NP voucher... 154580 bp Brandisia hancei QL-PLN-00-007 555 bp View
OP262731.1 nt Brandisia hancei isolate WX voucher... 155288 bp Brandisia hancei QL-PLN-00-007 555 bp View
OP262733.1 nt Brandisia kwangsiensis isolate JX 2... 155029 bp Brandisia kwangsiensis QL-PLN-00-007 555 bp View
OP262734.1 nt Brandisia kwangsiensis isolate MLP ... 159469 bp Brandisia kwangsiensis QL-PLN-00-007 555 bp View
OP262735.1 nt Brandisia kwangsiensis isolate XC v... 159382 bp Brandisia kwangsiensis QL-PLN-00-007 555 bp View
OP262736.1 nt Brandisia kwangsiensis isolate XY v... 159382 bp Brandisia kwangsiensis QL-PLN-00-007 555 bp View
OP262738.1 nt Brandisia racemosa isolate 2 vouche... 154833 bp Brandisia racemosa QL-PLN-00-007 554 bp View
OP262739.1 nt Brandisia rosea var. flava isolate ... 155112 bp Brandisia rosea var. flava QL-PLN-00-007 562 bp View
OP262740.1 nt Brandisia rosea var. flava isolate ... 155119 bp Brandisia rosea var. flava QL-PLN-00-007 562 bp View
OP262741.1 nt Brandisia rosea var. flava isolate ... 155119 bp Brandisia rosea var. flava QL-PLN-00-007 562 bp View
OP262742.1 nt Brandisia rosea var. flava isolate ... 155112 bp Brandisia rosea var. flava QL-PLN-00-007 562 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.