Match details
Record ID: |
OP262741.1 |
Database: |
nt |
Go to original record |
Description: |
Brandisia rosea var. flava isolate 3 voucher KUN:ChenZ-023 plastid, complete genome. |
Taxon: |
Brandisia rosea var. flava |
Original size: |
155119 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48213 |
48774 |
+ |
562 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaagaaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa aaaaaaggat aggtgcagag actcaatgga agctgttcta
201 acaaataaaa tggagttgat tgcgctggta gaggaatgaa acttcagaaa
251 ggatgaagga taaacgtatc tattgaatac tatatcaaaa tggttgatta
301 atgatggccc gaatctgtat ctgtattttt gaatacgaaa aatggaagaa
351 ttggtgtgaa ttgattccat attgaagaaa gaatattcat tcatcaaatt
401 cttcactcca tagtccgata gatcttttaa agaactgatt aatcggacga
451 gaataaagat agagtcccat tctacatgtc aataccggca acaatgaaat
501 ttatagtaag aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt
551 ccctctatcc cc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
562 |
543 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.