Amplicon details

Amplicon:

562 bp
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaagaaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151   aacgaaaaaa aaaaaaggat aggtgcagag actcaatgga agctgttcta
201   acaaataaaa tggagttgat tgcgctggta gaggaatgaa acttcagaaa
251   ggatgaagga taaacgtatc tattgaatac tatatcaaaa tggttgatta
301   atgatggccc gaatctgtat ctgtattttt gaatacgaaa aatggaagaa
351   ttggtgtgaa ttgattccat attgaagaaa gaatattcat tcatcaaatt
401   cttcactcca tagtccgata gatcttttaa agaactgatt aatcggacga
451   gaataaagat agagtcccat tctacatgtc aataccggca acaatgaaat
501   ttatagtaag aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt
551   ccctctatcc cc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP262739.1 nt Brandisia rosea var. flava isolate ... 155112 bp Brandisia rosea var. flava QL-PLN-00-007 562 bp View
OP262740.1 nt Brandisia rosea var. flava isolate ... 155119 bp Brandisia rosea var. flava QL-PLN-00-007 562 bp View
OP262741.1 nt Brandisia rosea var. flava isolate ... 155119 bp Brandisia rosea var. flava QL-PLN-00-007 562 bp View
OP262742.1 nt Brandisia rosea var. flava isolate ... 155112 bp Brandisia rosea var. flava QL-PLN-00-007 562 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.