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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP243284.1 nt Primulina sp. ZYZ-2023a voucher WF2... 972 bp Primulina sp. ZYZ-2023a QL-PLN-00-007 552 bp View
OP243285.1 nt Primulina sp. ZYZ-2023c voucher WF2... 972 bp Primulina sp. ZYZ-2023c QL-PLN-00-007 552 bp View
OP262699.1 nt Brandisia chevalieri isolate 2 vouc... 155064 bp Brandisia chevalieri QL-PLN-00-007 556 bp View
OP262700.1 nt Brandisia chevalieri isolate 3 vouc... 155064 bp Brandisia chevalieri QL-PLN-00-007 556 bp View
OP262702.1 nt Brandisia discolor isolate CY 2 vou... 155232 bp Brandisia discolor QL-PLN-00-007 556 bp View
OP262703.1 nt Brandisia discolor isolate CYS 1 vo... 155148 bp Brandisia discolor QL-PLN-00-007 556 bp View
OP262704.1 nt Brandisia discolor isolate CYS 2 vo... 155072 bp Brandisia discolor QL-PLN-00-007 556 bp View
OP262705.1 nt Brandisia discolor isolate CYS 3 vo... 155062 bp Brandisia discolor QL-PLN-00-007 556 bp View
OP262706.1 nt Brandisia discolor isolate DL vouch... 155144 bp Brandisia discolor QL-PLN-00-007 556 bp View
OP262707.1 nt Brandisia discolor isolate KP 1 vou... 154998 bp Brandisia discolor QL-PLN-00-007 556 bp View
OP262708.1 nt Brandisia discolor isolate KP 2 vou... 155003 bp Brandisia discolor QL-PLN-00-007 556 bp View
OP262709.1 nt Brandisia discolor isolate L vouche... 154915 bp Brandisia discolor QL-PLN-00-007 557 bp View
OP262710.1 nt Brandisia discolor isolate NE 1 vou... 155225 bp Brandisia discolor QL-PLN-00-007 556 bp View
OP262711.1 nt Brandisia discolor isolate NE 2 vou... 155232 bp Brandisia discolor QL-PLN-00-007 556 bp View
OP262712.1 nt Brandisia discolor isolate NE 3 vou... 155225 bp Brandisia discolor QL-PLN-00-007 556 bp View
OP262713.1 nt Brandisia discolor isolate TD vouch... 155064 bp Brandisia discolor QL-PLN-00-007 556 bp View
OP262715.1 nt Brandisia glabrescens isolate LC 1 ... 155336 bp Brandisia glabrescens QL-PLN-00-007 555 bp View
OP262716.1 nt Brandisia glabrescens isolate LC 2 ... 155313 bp Brandisia glabrescens QL-PLN-00-007 556 bp View
OP262717.1 nt Brandisia glabrescens isolate PB 1 ... 155176 bp Brandisia glabrescens QL-PLN-00-007 556 bp View
OP262718.1 nt Brandisia glabrescens isolate PB 2 ... 155176 bp Brandisia glabrescens QL-PLN-00-007 556 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.