European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
ON815623.1 nt Phlomoides congesta isolate M96 vou... 151871 bp Phlomoides congesta QL-PLN-00-007 560 bp View
ON815624.1 nt Phlomoides lehmanniana isolate M16 ... 151450 bp Phlomoides lehmanniana QL-PLN-00-007 562 bp View
ON815625.1 nt Phlomoides longiaristata isolate M8... 151763 bp Phlomoides longiaristata QL-PLN-00-007 555 bp View
ON815626.1 nt Phlomoides pratensis isolate M101 v... 151844 bp Phlomoides pratensis QL-PLN-00-007 562 bp View
ON815627.1 nt Phlomoides rotata isolate M106 vouc... 151877 bp Phlomoides rotata QL-PLN-00-007 560 bp View
ON815628.1 nt Phlomoides sogdiana isolate M24 vou... 151511 bp Phlomoides sogdiana QL-PLN-00-007 562 bp View
ON815629.1 nt Phlomoides speciosa isolate M82 vou... 151288 bp Phlomoides speciosa QL-PLN-00-007 562 bp View
ON815630.1 nt Phlomoides subspicata isolate M11 v... 151335 bp Phlomoides subspicata QL-PLN-00-007 562 bp View
ON815631.1 nt Phlomoides tuberosa isolate Y6A vou... 151764 bp Phlomoides tuberosa QL-PLN-00-007 562 bp View
ON815632.1 nt Phlomoides uniflora isolate M36 vou... 150671 bp Phlomoides uniflora QL-PLN-00-007 562 bp View
ON858843.1 nt Isodon coetsa var. coetsa chloropla... 152745 bp Isodon coetsa var. coetsa QL-PLN-00-007 555 bp View
ON858844.1 nt Isodon coetsa var. cavaleriei chlor... 152674 bp Isodon coetsa var. cavaleriei QL-PLN-00-007 533 bp View
ON858849.1 nt Isodon eriocalyx chloroplast, compl... 152629 bp Isodon eriocalyx QL-PLN-00-007 554 bp View
ON858851.1 nt Isodon excisus chloroplast, complet... 152290 bp Isodon excisus QL-PLN-00-007 554 bp View
ON858853.1 nt Isodon flavidus chloroplast, comple... 152266 bp Isodon flavidus QL-PLN-00-007 533 bp View
ON858856.1 nt Isodon grandifolius var. atuntzeens... 152693 bp Isodon grandifolius var. atuntzeensis QL-PLN-00-007 554 bp View
ON858858.1 nt Isodon sp. YPC-2018 chloroplast, co... 152633 bp Isodon sp. YPC-2018 QL-PLN-00-007 533 bp View
ON858859.1 nt Isodon inflexus chloroplast, comple... 152606 bp Isodon inflexus QL-PLN-00-007 554 bp View
ON858862.1 nt Isodon irroratus chloroplast, compl... 152694 bp Isodon irroratus QL-PLN-00-007 554 bp View
ON858863.1 nt Isodon irroratus chloroplast, compl... 152681 bp Isodon irroratus QL-PLN-00-007 533 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.