Match details
Record ID: |
ON858851.1 |
Database: |
nt |
Go to original record |
Description: |
Isodon excisus chloroplast, complete genome. |
Taxon: |
Isodon excisus |
Original size: |
152290 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46655 |
47208 |
+ |
554 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaaaaa ggttcaaaaa
151 acgaaaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201 tgggagttga ctgcgctggt agaggaatct ttccatggaa actttagaaa
251 ggatgaagga taaacgcatc atactatatc aaaatcaaat ggttaatgat
301 ggcccgaatc ttttaatata aaaaaatgga aaaattggtg tgaattgatt
351 ctacgttgaa gaaaaaatcg aatattcatc aactcattcg ctccatagtc
401 cgatagatct tttaaagaac tgattaatcg gacgagaata aagatagagt
451 cccattctac atgctacatg tcaatatcgg caacaatgaa atttatagta
501 agaggaaaat ccgtcgactt taaaaatcgt gagggttcaa gtccctctat
551 cccc
View other 15 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.49e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
554 |
535 |
2.49e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.