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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 554 bp 
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaaaaa ggttcaaaaa
151   acgaaaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201   tgggagttga ctgcgctggt agaggaatct ttccatggaa actttagaaa
251   ggatgaagga taaacgcatc atactatatc aaaatcaaat ggttaatgat
301   ggcccgaatc ttttaatata aaaaaatgga aaaattggtg tgaattgatt
351   ctacgttgaa gaaaaaatcg aatattcatc aactcattcg ctccatagtc
401   cgatagatct tttaaagaac tgattaatcg gacgagaata aagatagagt
451   cccattctac atgctacatg tcaatatcgg caacaatgaa atttatagta
501   agaggaaaat ccgtcgactt taaaaatcgt gagggttcaa gtccctctat
551   cccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
ON858908.1 nt Isodon shikokianus var. occidentali... 152677 bp Isodon shikokianus var. occidentalis QL-PLN-00-007 554 bp View
MW376483.1 nt Isodon rubescens chloroplast, compl... 152727 bp Isodon rubescens QL-PLN-00-007 554 bp View
MW691144.1 nt Isodon japonicus chloroplast, compl... 152298 bp Isodon japonicus QL-PLN-00-007 554 bp View
ON858851.1 nt Isodon excisus chloroplast, complet... 152290 bp Isodon excisus QL-PLN-00-007 554 bp View
ON858856.1 nt Isodon grandifolius var. atuntzeens... 152693 bp Isodon grandifolius var. atuntzeensis QL-PLN-00-007 554 bp View
ON858859.1 nt Isodon inflexus chloroplast, comple... 152606 bp Isodon inflexus QL-PLN-00-007 554 bp View
ON858862.1 nt Isodon irroratus chloroplast, compl... 152694 bp Isodon irroratus QL-PLN-00-007 554 bp View
ON858864.1 nt Isodon japonicus var. glaucocalyx c... 152660 bp Isodon japonicus var. glaucocalyx QL-PLN-00-007 554 bp View
ON858865.1 nt Isodon japonicus var. japonicus chl... 152674 bp Isodon japonicus var. japonicus QL-PLN-00-007 554 bp View
ON858876.1 nt Isodon megathyrsus chloroplast, com... 152298 bp Isodon megathyrsus QL-PLN-00-007 554 bp View
ON858877.1 nt Isodon nervosus chloroplast, comple... 152291 bp Isodon nervosus QL-PLN-00-007 554 bp View
ON858892.1 nt Isodon serra chloroplast, complete ... 152551 bp Isodon serra QL-PLN-00-007 554 bp View
ON858906.1 nt Isodon umbrosus var. leucanthus chl... 152682 bp Isodon umbrosus var. leucanthus QL-PLN-00-007 554 bp View
ON858923.1 nt Isodon bulleyanus chloroplast, comp... 152281 bp Isodon bulleyanus QL-PLN-00-007 554 bp View
ON858925.1 nt Isodon loxothyrsus chloroplast, com... 152653 bp Isodon loxothyrsus QL-PLN-00-007 554 bp View
MT317099.1 nt Isodon serra chloroplast, complete ... 152676 bp Isodon serra QL-PLN-00-007 554 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.