Match details
Record ID: |
ON815625.1 |
Database: |
nt |
Go to original record |
Description: |
Phlomoides longiaristata isolate M89 voucher KUN-NJ072 plastid, complete genome. |
Taxon: |
Phlomoides longiaristata |
Original size: |
151763 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46773 |
47327 |
+ |
555 bp |
|
1 cgaaatcggt agacgctacg gacttaatta taattaaatt gagccttagt
51 gtgggaaacc tactaagtga taactttcaa attcagagaa accccggaat
101 taataaaaat gggcgatcct gatccaaatc ctgttttttc aaaacaaagg
151 ttcaaaaaac gaactaaagg ataggtgcag agactcaatg gaagctgttc
201 taacaaatgg agttgactgc gttggtagag gaatcctttc tacggaaact
251 tcagaaagga taaacgtatc tatcgaatac tatatcaaat gattaatgat
301 ggcccgaatc cgtattttta atatgaaaat agaagaattg gtgtgaattg
351 attctataat tgaagaaaaa atcgaatatt cattcatcaa atcattcact
401 ccatagtccg atagatcttt taaagaactg attaatcgga cgagaataaa
451 gatagagtcc cattctacat gtcaatactg gcaacaatga aatttatagt
501 aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca agtccctcta
551 tcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.50e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
555 |
536 |
2.50e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.