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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MZ274156.1 nt Leonurus cardiaca chloroplast, comp... 151792 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274157.1 nt Leonurus cardiaca chloroplast, comp... 151236 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274158.1 nt Leonurus cardiaca chloroplast, comp... 151808 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274159.1 nt Leonurus cardiaca chloroplast, comp... 151236 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274160.1 nt Leonurus cardiaca chloroplast, comp... 151236 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274161.1 nt Leonurus cardiaca chloroplast, comp... 151792 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274162.1 nt Leonurus cardiaca chloroplast, comp... 151790 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274163.1 nt Leonurus cardiaca chloroplast, comp... 151831 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274164.1 nt Leonurus cardiaca chloroplast, comp... 151236 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274165.1 nt Leonurus cardiaca chloroplast, comp... 151236 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274166.1 nt Leonurus cardiaca chloroplast, comp... 151236 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274167.1 nt Leonurus cardiaca chloroplast, comp... 151236 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274168.1 nt Leonurus cardiaca chloroplast, comp... 151831 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274169.1 nt Leonurus cardiaca chloroplast, comp... 151236 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ274170.1 nt Leonurus cardiaca chloroplast, comp... 151828 bp Leonurus cardiaca QL-PLN-00-007 563 bp View
MZ328080.1 nt Saccharum officinarum cultivar GT35... 141181 bp Saccharum officinarum QL-PLN-00-007 526 bp View
MZ351433.1 nt Imperata cylindrica chloroplast, co... 141044 bp Imperata cylindrica QL-PLN-00-007 526 bp View
MZ379834.1 nt Trichosanthes sp. isolate 16625 chl... 155669 bp Trichosanthes sp. QL-PLN-00-007 589 bp View
MZ397802.1 nt Amaranthus dubius chloroplast, comp... 150520 bp Amaranthus dubius QL-PLN-00-007 594 bp View
MZ424305.1 nt Oryza sativa cultivar SR86 chloropl... 134496 bp Oryza sativa QL-PLN-00-007 615 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.