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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MW928532.1 nt Schnabelia tetrodonta chloroplast, ... 157004 bp Schnabelia tetrodonta QL-PLN-00-007 542 bp View
MW928533.1 nt Chimonobambusa quadrangularis chlor... 139540 bp Chimonobambusa quadrangularis QL-PLN-00-007 614 bp View
MW928535.1 nt Dysosma versipellis chloroplast, co... 156853 bp Dysosma versipellis QL-PLN-00-007 541 bp View
MW929176.1 nt Amana baohuaensis chloroplast, comp... 151062 bp Amana baohuaensis QL-PLN-00-007 568 bp View
MW970109.1 nt Dracocephalum heterophyllum chlorop... 150860 bp Dracocephalum heterophyllum QL-PLN-00-007 568 bp View
MW970411.1 nt Coffea liberica chloroplast, comple... 154799 bp Coffea liberica QL-PLN-00-007 571 bp View
MW970412.1 nt Coffea racemosa chloroplast, comple... 154942 bp Coffea racemosa QL-PLN-00-007 570 bp View
MW980363.1 nt Pinguicula vulgaris subsp. anzalone... 1579 bp Pinguicula vulgaris subsp. anzalonei QL-PLN-00-007 558 bp View
MW980367.1 nt Pinguicula vulgaris subsp. vestina ... 1578 bp Pinguicula vulgaris subsp. vestina QL-PLN-00-007 557 bp View
MW980375.1 nt Pinguicula vulgaris subsp. vulgaris... 1578 bp Pinguicula vulgaris subsp. vulgaris QL-PLN-00-007 557 bp View
MW980379.1 nt Pinguicula fiorii isolate FIO-1 trn... 1579 bp Pinguicula fiorii QL-PLN-00-007 558 bp View
MW980381.1 nt Pinguicula sp. LM-2021 isolate POL_... 1579 bp Pinguicula sp. LM-2021 QL-PLN-00-007 557 bp View
MW999225.1 nt Sorghum bicolor subsp. drummondii c... 140754 bp Sorghum bicolor subsp. drummondii QL-PLN-00-007 523 bp View
MY550096.1 emblrelpat Sequence 808 from patent US 11130957. 11106 bp unidentified QL-PLN-00-007 591 bp View
MZ063774.1 nt Clerodendranthus spicatus chloropla... 152155 bp Clerodendranthus spicatus QL-PLN-00-007 546 bp View
MZ073339.1 nt Tabernaemontana divaricata chloropl... 157954 bp Tabernaemontana divaricata QL-PLN-00-007 571 bp View
MZ073665.1 nt Persicaria perfoliata chloroplast, ... 160730 bp Persicaria perfoliata QL-PLN-00-007 601 bp View
MZ145043.1 nt Stipa capillata isolate KRA0496240 ... 137823 bp Stipa capillata QL-PLN-00-007 598 bp View
MZ146999.1 nt Stipa capillata voucher KRA0496240 ... 137823 bp Stipa capillata QL-PLN-00-007 598 bp View
MZ150795.1 nt Phlomoides rotata chloroplast, comp... 151825 bp Phlomoides rotata QL-PLN-00-007 560 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.