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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT650351.1 nt Eremophila tietkensii voucher MELU ... 151773 bp Eremophila tietkensii QL-PLN-00-007 567 bp View
MT650352.1 nt Eremophila phyllopoda voucher MELU ... 151837 bp Eremophila phyllopoda QL-PLN-00-007 567 bp View
MT650353.1 nt Eremophila gilesii voucher MELU pen... 151666 bp Eremophila gilesii QL-PLN-00-007 558 bp View
MT650356.1 nt Eremophila sp. Murgoo (S.J.J.Davies... 151655 bp Eremophila sp. Murgoo (S.J.J.Davies s.n. 15/8/1960) QL-PLN-00-007 565 bp View
MT650357.1 nt Eremophila sp. Little Sandy Desert ... 151522 bp Eremophila sp. Little Sandy Desert (A.A.Mitchell PRP 1263) QL-PLN-00-007 557 bp View
MT650359.1 nt Myoporum sandwicense voucher MELU p... 151685 bp Myoporum sandwicense QL-PLN-00-007 563 bp View
MT650360.1 nt Myoporum sandwicense voucher MELU p... 151671 bp Myoporum sandwicense QL-PLN-00-007 563 bp View
MT650361.1 nt Myoporum sandwicense voucher MELU p... 151663 bp Myoporum sandwicense QL-PLN-00-007 563 bp View
MT650363.1 nt Myoporum sp. Mey2053 voucher MELU p... 151680 bp Myoporum sp. Mey2053 QL-PLN-00-007 563 bp View
MT650366.1 nt Eremophila spongiocarpa voucher MEL... 151687 bp Eremophila spongiocarpa QL-PLN-00-007 573 bp View
MT650367.1 nt Eremophila gilesii voucher MELU pen... 151446 bp Eremophila gilesii QL-PLN-00-007 563 bp View
MT650369.1 nt Eremophila decipiens voucher MELU p... 151562 bp Eremophila decipiens QL-PLN-00-007 566 bp View
MT650375.1 nt Eremophila sp. Tropicana (B.Buirche... 151604 bp Eremophila sp. Tropicana (B.Buirchell BB 323) QL-PLN-00-007 565 bp View
MT650380.1 nt Eremophila lehmanniana voucher MELU... 151501 bp Eremophila lehmanniana QL-PLN-00-007 564 bp View
MT650381.1 nt Eremophila fallax voucher MELU pend... 151639 bp Eremophila fallax QL-PLN-00-007 564 bp View
MT650382.1 nt Eremophila macdonnellii voucher MEL... 151307 bp Eremophila macdonnellii QL-PLN-00-007 565 bp View
MT650383.1 nt Eremophila glabra voucher MELU pend... 151582 bp Eremophila glabra QL-PLN-00-007 566 bp View
MT650387.1 nt Eremophila maculata voucher MELU pe... 147669 bp Eremophila maculata QL-PLN-00-007 564 bp View
MT650388.1 nt Eremophila crassifolia voucher MELU... 151663 bp Eremophila crassifolia QL-PLN-00-007 557 bp View
MT650390.1 nt Eremophila freelingii voucher NSW98... 151880 bp Eremophila freelingii QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.