Match details
Record ID: |
MT650363.1 |
Database: |
nt |
Go to original record |
Description: |
Myoporum sp. Mey2053 voucher MELU pending plastid, complete genome. |
Taxon: |
Myoporum sp. Mey2053 |
Original size: |
151680 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48127 |
48689 |
+ |
563 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 agcgaaaaaa aaaggatagg tgcagagact caatggaagc tgttctaaca
201 aatggagttg actgcgttgg tagaggaatc tttccatcga aacttcagaa
251 aggatgaagg ataaaggtat atattgaata ctatatcaaa tgattaatga
301 tggccctaat ctgtatctgt atttttttat atgaaaaatg gaagaattgg
351 tatgaagtga ttccacattg aagaaagaat caaatattcc ttcatcaaat
401 cattcactcc acagtctgat agttctttta aagaactgat taatcggaca
451 agaataaaga tagagtccca ttctacatgt caatattggc aacaatgcaa
501 tttatagtaa gaggaaaatc cgtcgacttt aaaagtcgtg agggttcaag
551 tccctctatc ccc
View other 7 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
563 |
544 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.