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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT650312.1 nt Eremophila sp. Wubin North (R.Wait ... 151743 bp Eremophila sp. Wubin North (R.Wait 8305) QL-PLN-00-007 564 bp View
MT650313.1 nt Eremophila platycalyx voucher MELUD... 151571 bp Eremophila platycalyx QL-PLN-00-007 565 bp View
MT650314.1 nt Eremophila glabra voucher MELUD1192... 151539 bp Eremophila glabra QL-PLN-00-007 566 bp View
MT650315.1 nt Eremophila platycalyx voucher MELUD... 151928 bp Eremophila platycalyx QL-PLN-00-007 567 bp View
MT650318.1 nt Eremophila lanceolata voucher MELUD... 151587 bp Eremophila lanceolata QL-PLN-00-007 565 bp View
MT650320.1 nt Eremophila petrophila voucher MELUD... 151687 bp Eremophila petrophila QL-PLN-00-007 564 bp View
MT650321.1 nt Eremophila flaccida voucher MELUD11... 151711 bp Eremophila flaccida QL-PLN-00-007 566 bp View
MT650324.1 nt Eremophila latrobei voucher MELUD11... 151543 bp Eremophila latrobei QL-PLN-00-007 556 bp View
MT650327.1 nt Eremophila jucunda voucher MELUD119... 151545 bp Eremophila jucunda QL-PLN-00-007 557 bp View
MT650328.1 nt Eremophila cuneifolia voucher MELUD... 151728 bp Eremophila cuneifolia QL-PLN-00-007 578 bp View
MT650331.1 nt Eremophila sp. Yarlarweelor (M.Gree... 151577 bp Eremophila sp. Yarlarweelor (M.Greeve 41) QL-PLN-00-007 557 bp View
MT650332.1 nt Eremophila fraseri voucher MELUD119... 151948 bp Eremophila fraseri QL-PLN-00-007 567 bp View
MT650333.1 nt Eremophila conferta voucher MELUD11... 151530 bp Eremophila conferta QL-PLN-00-007 557 bp View
MT650337.1 nt Eremophila glabra voucher MELUD1192... 151548 bp Eremophila glabra QL-PLN-00-007 564 bp View
MT650342.1 nt Eremophila glabra voucher MELUD1192... 151587 bp Eremophila glabra QL-PLN-00-007 566 bp View
MT650343.1 nt Eremophila glabra voucher MELUD1193... 151496 bp Eremophila glabra QL-PLN-00-007 567 bp View
MT650344.1 nt Eremophila glabra voucher MELUD1193... 151578 bp Eremophila glabra QL-PLN-00-007 566 bp View
MT650348.1 nt Eremophila shonae voucher MELUD1193... 151629 bp Eremophila shonae QL-PLN-00-007 563 bp View
MT650349.1 nt Eremophila hillii voucher MELU pend... 151501 bp Eremophila hillii QL-PLN-00-007 558 bp View
MT650350.1 nt Eremophila hillii voucher MELU pend... 151564 bp Eremophila hillii QL-PLN-00-007 566 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.