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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MH921390.1 nt Poa diaphora var. songarica voucher... 1742 bp Poa diaphora var. songarica QL-PLN-00-007 618 bp View
MH921391.1 nt Poa diaphora var. songarica voucher... 1745 bp Poa diaphora var. songarica QL-PLN-00-007 612 bp View
MH921392.1 nt Poa diaphora var. songarica voucher... 1744 bp Poa diaphora var. songarica QL-PLN-00-007 612 bp View
MH921393.1 nt Poa sintenisii voucher US:Hand 6102... 1766 bp Poa sintenisii QL-PLN-00-007 611 bp View
MH921395.1 nt Poa speluncarum voucher US:Soreng 8... 1777 bp Poa speluncarum QL-PLN-00-007 618 bp View
MH935268.1 nt Cnidoscolus bahianus voucher A.A. C... 1044 bp Cnidoscolus bahianus QL-PLN-00-007 599 bp View
MH935306.1 nt Cnidoscolus populifolius voucher C.... 1035 bp Cnidoscolus populifolius QL-PLN-00-007 599 bp View
MH935322.1 nt Cnidoscolus elasticus voucher C.A. ... 1044 bp Cnidoscolus elasticus QL-PLN-00-007 601 bp View
MH988715.1 nt Ampelocalamus calcareus chloroplast... 139666 bp Ampelocalamus calcareus QL-PLN-00-007 614 bp View
MH988716.1 nt Arundinaria fargesii chloroplast, c... 139660 bp Arundinaria fargesii QL-PLN-00-007 614 bp View
MH988720.1 nt Fargesia qinlingensis chloroplast, ... 139626 bp Fargesia qinlingensis QL-PLN-00-007 614 bp View
MH988722.1 nt Fargesia sp. YYZ-2019 chloroplast, ... 139591 bp Fargesia sp. YYZ-2019 QL-PLN-00-007 614 bp View
MH988724.1 nt Fargesia denudata chloroplast, comp... 139612 bp Fargesia denudata QL-PLN-00-007 614 bp View
MI849046.1 emblrelpat Sequence 4319 from patent US 10006042. 13722 bp unidentified QL-PLN-00-007 615 bp View
MK040922.1 nt Lycium chinense plastid, complete g... 155756 bp Lycium chinense QL-PLN-00-007 571 bp View
MK104128.1 nt Cardiocrinum cathayanum chloroplast... 152502 bp Cardiocrinum cathayanum QL-PLN-00-007 611 bp View
MK123520.1 nt Aulacocalyx caudata voucher Mambo &... 1657 bp Aulacocalyx caudata QL-PLN-00-007 567 bp View
MK123521.1 nt Gardenia elata voucher Alejandro s.... 1687 bp Gardenia elata QL-PLN-00-007 550 bp View
MK123522.1 nt Gardenia jasminoides voucher Mouly ... 1657 bp Gardenia jasminoides QL-PLN-00-007 550 bp View
MK123528.1 nt Rothmannia annae voucher Mouly s.n.... 1739 bp Rothmannia annae QL-PLN-00-007 563 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.