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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MH181167.1 nt Hyparrhenia violascens isolate TK76... 138684 bp Hyparrhenia violascens QL-PLN-00-007 525 bp View
MH181168.1 nt Andropogon schirensis isolate TK266... 139840 bp Andropogon schirensis QL-PLN-00-007 525 bp View
MH181169.1 nt Hyparrhenia dichroa isolate TK333 c... 138851 bp Hyparrhenia dichroa QL-PLN-00-007 530 bp View
MH181170.1 nt Monocymbium lanceolatum isolate TK7... 139056 bp Monocymbium lanceolatum QL-PLN-00-007 525 bp View
MH181171.1 nt Andropogon gyrans isolate TK428 chl... 140726 bp Anatherum gyrans QL-PLN-00-007 525 bp View
MH181172.1 nt Andropogon ingratus isolate TK713 c... 139764 bp Andropogon ingratus QL-PLN-00-007 531 bp View
MH181173.1 nt Andropogon appendiculatus isolate T... 140579 bp Andropogon appendiculatus QL-PLN-00-007 525 bp View
MH181175.1 nt Andropogon pusillus isolate TK734 c... 138986 bp Andropogon pusillus QL-PLN-00-007 531 bp View
MH181177.1 nt Andropogon greenwayi isolate TK426 ... 139016 bp Andropogon greenwayi QL-PLN-00-007 525 bp View
MH181179.1 nt Hyparrhenia papillipes isolate TK63... 139151 bp Hyparrhenia papillipes QL-PLN-00-007 530 bp View
MH181180.1 nt Andropogon huillensis isolate TK538... 139492 bp none QL-PLN-00-007 525 bp View
MH181181.1 nt Andropogon chrysostachyus isolate T... 139459 bp Andropogon chrysostachyus QL-PLN-00-007 529 bp View
MH181182.1 nt Andropogon laxatus isolate TK540 ch... 140838 bp Andropogon laxatus QL-PLN-00-007 527 bp View
MH181183.1 nt Schizachyrium ursulus isolate TK657... 140079 bp Schizachyrium ursulus QL-PLN-00-007 525 bp View
MH181184.1 nt Andropogon abyssinicus isolate TK36... 138679 bp Andropogon abyssinicus QL-PLN-00-007 532 bp View
MH181185.1 nt Andropogon glaucescens isolate TK41... 140278 bp Anatherum glaucescens QL-PLN-00-007 525 bp View
MH181186.1 nt Andropogon heterantherus isolate TK... 139205 bp Andropogon heterantherus QL-PLN-00-007 525 bp View
MH181187.1 nt Andropogon abyssinicus isolate TK36... 138700 bp Andropogon abyssinicus QL-PLN-00-007 532 bp View
MH181189.1 nt Schizachyrium thollonii isolate TK5... 140395 bp Schizachyrium thollonii QL-PLN-00-007 530 bp View
MH181190.1 nt Hyparrhenia bagirmica isolate TK746... 138737 bp Hyparrhenia bagirmica QL-PLN-00-007 530 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.