Match details
Record ID: |
MH181187.1 |
Database: |
nt |
Go to original record |
Description: |
Andropogon abyssinicus isolate TK363 chloroplast, complete genome. |
Taxon: |
Andropogon abyssinicus |
Original size: |
138700 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47180 |
47711 |
+ |
532 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc cctttttttg aaaaaacaag cggttctcaa
151 actagaaccc aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gaagtaataa cgattaatca cagaacccat attataatta
251 taatataggt tctttatttt atttttagaa tgcaatttgg aaggattatg
301 aaatagaaaa ttcataattt ttttagaatt attgtgaatc tattccaatc
351 gaatattgag taatcaaatc cttcaattca ttgttttcga gatcttttaa
401 aaagtggatt aatcggacga ggataaagag agagtcccat tctacatgtc
451 aatactgaca acaatgaaat ttctagtaaa aggaaaatcc gtcgacttta
501 taagtcgtga gggttcaagt ccctctatcc cc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.39e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
532 |
513 |
2.39e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.