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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MF926137.1 nt Ardisia gigantifolia voucher Wang20... 901 bp Ardisia gigantifolia QL-PLN-00-007 572 bp View
MF926138.1 nt Ardisia hanceana voucher Wang200718... 901 bp Ardisia hanceana QL-PLN-00-007 572 bp View
MF926139.1 nt Ardisia humilis voucher Wang2007300... 902 bp Ardisia humilis QL-PLN-00-007 572 bp View
MF926140.1 nt Ardisia japonica voucher Wang200729... 901 bp Ardisia japonica QL-PLN-00-007 572 bp View
MF926141.1 nt Ardisia kachinensis voucher Gao et ... 907 bp Ardisia kachinensis QL-PLN-00-007 582 bp View
MF926142.1 nt Ardisia linangensis voucher Wang200... 901 bp Ardisia linangensis QL-PLN-00-007 572 bp View
MF926143.1 nt Ardisia lindleyana voucher Wang2007... 919 bp Ardisia lindleyana QL-PLN-00-007 582 bp View
MF926144.1 nt Ardisia maclurei voucher Wang200718... 892 bp Ardisia maclurei QL-PLN-00-007 572 bp View
MF926146.1 nt Ardisia mamillata voucher Wang20071... 922 bp Ardisia mamillata QL-PLN-00-007 582 bp View
MF926147.1 nt Ardisia obtusa voucher Wang2007302 ... 911 bp Ardisia obtusa QL-PLN-00-007 579 bp View
MF926148.1 nt Ardisia omissa voucher Wang2007117 ... 911 bp Ardisia omissa QL-PLN-00-007 582 bp View
MF926149.1 nt Ardisia ordinata voucher Chen200729... 899 bp Ardisia ordinata QL-PLN-00-007 570 bp View
MF926150.1 nt Ardisia perpendicularis voucher Wan... 900 bp Ardisia perpendicularis QL-PLN-00-007 572 bp View
MF926151.1 nt Ardisia pingbienensis voucher Wang2... 901 bp Ardisia pingbienensis QL-PLN-00-007 572 bp View
MF926153.1 nt Ardisia polysticta voucher Wang2007... 901 bp Ardisia polysticta QL-PLN-00-007 572 bp View
MF926154.1 nt Ardisia porifera voucher Zheng822 t... 898 bp Ardisia porifera QL-PLN-00-007 572 bp View
MF926157.1 nt Ardisia pubivenula voucher Wang2007... 899 bp Ardisia pubivenula QL-PLN-00-007 570 bp View
MF926158.1 nt Ardisia purpureovillosa voucher Wan... 892 bp Ardisia purpureovillosa QL-PLN-00-007 572 bp View
MF926159.1 nt Ardisia pusilla voucher Wang2007111... 892 bp Ardisia pusilla QL-PLN-00-007 572 bp View
MF926160.1 nt Ardisia quinquegona voucher Wang200... 901 bp Ardisia quinquegona QL-PLN-00-007 572 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.