Match details
Record ID: |
MF926143.1 |
Database: |
nt |
Go to original record |
Description: |
Ardisia lindleyana voucher Wang2007112 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Ardisia lindleyana |
Original size: |
919 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
582 |
+ |
582 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tagtatggaa
51 cctactaagt gagaactttc aaattcagag aaaccctgga attaataaaa
101 atgggcaatc ctgagccaaa tcctcttttt cgaaaacaaa gattaaagga
151 aaataaaaaa gggggatagg tgcagagact caacggaagc tgttctaaca
201 aatggagttg atcgcgttgg tagaggaatc ttttcatcaa aacttcagaa
251 aggatgaaag ataaacgtat ataaacgtat atacatatgc atatgtactg
301 aaatcctata tcaaaataaa atgcttattt tttctttcta tgaaaaatag
351 aagaatcgtt gcgaatcgat tccacattcc acattgaata aaaaatttca
401 tattcattga tcaaatcatt tactccatag tctaatagat cttgtgaata
451 actgattaat caggcaagaa taaagataga gtcccattct acatgtcaat
501 accgacaaca ataatgaaat ttatagtacg aggaaaatcc gtcgacttta
551 taaatcgtga gggttcaagt ccctctatcc cc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.62e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
582 |
563 |
2.62e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.