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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LC609621.1 nt Musa acuminata subsp. microcarpa ch... 170456 bp Musa acuminata subsp. microcarpa QL-PLN-00-007 594 bp View
LC609622.1 nt Musa acuminata var. zebrina chlorop... 169903 bp Musa acuminata var. zebrina QL-PLN-00-007 594 bp View
LC609623.1 nt Musa balbisiana chloroplast DNA, co... 169900 bp Musa balbisiana QL-PLN-00-007 609 bp View
LC609625.1 nt Musa x chiliocarpa chloroplast DNA,... 170959 bp Musa x chiliocarpa QL-PLN-00-007 609 bp View
LC609626.1 nt Musa acuminata cv. Pei Chiao chloro... 170275 bp Musa acuminata QL-PLN-00-007 594 bp View
LC609627.1 nt Musa acuminata cv. Pisang Lilin chl... 170586 bp Musa acuminata QL-PLN-00-007 594 bp View
LC609628.1 nt Musa acuminata cv. Williams chlorop... 169859 bp Musa acuminata QL-PLN-00-007 594 bp View
LC609770.1 nt Musa acuminata cv. Morado chloropla... 169696 bp Musa acuminata QL-PLN-00-007 594 bp View
LC609772.1 nt Musa x formobisiana chloroplast DNA... 171982 bp Musa x formobisiana QL-PLN-00-007 594 bp View
LC609773.1 nt Musa itinerans var. formosana chlor... 171478 bp Musa itinerans var. formosana QL-PLN-00-007 594 bp View
LC609775.1 nt Musa laterita chloroplast DNA, comp... 170148 bp Musa laterita QL-PLN-00-007 594 bp View
LC609776.1 nt Musa ornata chloroplast DNA, comple... 170285 bp Musa ornata QL-PLN-00-007 594 bp View
LC609778.1 nt Musa velutina chloroplast DNA, comp... 170061 bp Musa velutina QL-PLN-00-007 594 bp View
LC610771.1 nt Musa siamensis chloroplast DNA, com... 170349 bp Musa siamensis QL-PLN-00-007 594 bp View
LC642244.1 nt Oryza nivara CX19 chloroplast DNA, ... 134502 bp Oryza nivara QL-PLN-00-007 615 bp View
LC649170.1 nt Nicotiana plumbaginifolia YN25 chlo... 155945 bp Nicotiana plumbaginifolia QL-PLN-00-007 571 bp View
LC681536.2 nt Phyllostachys reticulata cv. banzhu... 139689 bp Phyllostachys reticulata QL-PLN-00-007 614 bp View
LC775283.1 nt Callicarpa dichotoma HIRO:HIRO-MY-1... 154110 bp Callicarpa dichotoma QL-PLN-00-007 565 bp View
LN680877.1 nt Stachyarrhena heterochroa plastid g... 927 bp Stachyarrhena heterochroa QL-PLN-00-007 567 bp View
LN684311.1 nt Cucumis melo genomic scaffold, unas... 1469 bp Cucumis melo QL-PLN-00-007 613 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.