Match details
Record ID: |
LC609625.1 |
Database: |
nt |
Go to original record |
Description: |
Musa x chiliocarpa chloroplast DNA, complete genome. |
Taxon: |
Musa x chiliocarpa |
Original size: |
170959 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49710 |
50318 |
+ |
609 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tagtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc cttattttga gaaaacaaag gtttataaaa
151 ctagaattta aaaggatagg tgcagagact caatggaagc tgttctaacg
201 aatggagttg actacgtttt gttggtagct ggaatccgtc tatcaaaatt
251 acagaaaaga tggtcctata tacctaatac gtatgtatac atactgccat
301 atcaaacgat taatcatgac ccgaatctat tatattataa ttatatataa
351 ttataatatg aaaaattata atatgaaaaa ttcagagtta ttatgaatcc
401 atttcaatgg aagttgaagg aagaatcgaa tattcaatta tgaaatcatt
451 cattccagag tttgatagat cttttgaaaa actgattaat cggacgagaa
501 taaagagaga gtcccattct acatgtcaat accgacaaca atgaaattta
551 tagtaagagg aaaatccgtc gactttaaaa atcgtgaggg ttcaagtccc
601 tctatcccc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.74e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
609 |
590 |
2.74e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.