Amplicon details

Amplicon:

609 bp
1     cgaaatcggt agacgctacg gacttgattg gattgagcct tagtatggaa
51    acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaat
101   gggcaatcct gagccaaatc cttattttga gaaaacaaag gtttataaaa
151   ctagaattta aaaggatagg tgcagagact caatggaagc tgttctaacg
201   aatggagttg actacgtttt gttggtagct ggaatccgtc tatcaaaatt
251   acagaaaaga tggtcctata tacctaatac gtatgtatac atactgccat
301   atcaaacgat taatcatgac ccgaatctat tatattataa ttatatataa
351   ttataatatg aaaaattata atatgaaaaa ttcagagtta ttatgaatcc
401   atttcaatgg aagttgaagg aagaatcgaa tattcaatta tgaaatcatt
451   cattccagag tttgatagat cttttgaaaa actgattaat cggacgagaa
501   taaagagaga gtcccattct acatgtcaat accgacaaca atgaaattta
551   tagtaagagg aaaatccgtc gactttaaaa atcgtgaggg ttcaagtccc
601   tctatcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OX335502.1 nt Musa cultivar 'New-Mu-Nang' complet... 170318 bp Musa ABB Group QL-PLN-00-007 609 bp View
LC609623.1 nt Musa balbisiana chloroplast DNA, co... 169900 bp Musa balbisiana QL-PLN-00-007 609 bp View
LC609625.1 nt Musa x chiliocarpa chloroplast DNA,... 170959 bp Musa x chiliocarpa QL-PLN-00-007 609 bp View
OX365699.1 nt Musa cultivar 'New-Mu-Nang' complet... 170318 bp Musa ABI Group QL-PLN-00-007 609 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.