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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY987099.1 nt Poa laxa subsp. fernaldiana voucher... 1795 bp Poa laxa subsp. fernaldiana QL-PLN-00-007 611 bp View
KY987101.1 nt Poa laxa subsp. flexuosa voucher O:... 1795 bp Poa laxa subsp. flexuosa QL-PLN-00-007 611 bp View
KY987103.1 nt Poa laxa subsp. laxa voucher Schnee... 1794 bp Poa laxa subsp. laxa QL-PLN-00-007 611 bp View
KY987108.1 nt Poa laxa subsp. consauliae voucher ... 1793 bp Poa flexuosa subsp. consauliae QL-PLN-00-007 611 bp View
KY987110.1 nt Poa nemoralis voucher CAN:Gillespie... 1794 bp Poa nemoralis QL-PLN-00-007 611 bp View
KY987111.1 nt Poa ursina voucher CAN:Gillespie et... 1776 bp Poa ursina QL-PLN-00-007 611 bp View
KY999937.1 nt Festuca sinensis isolate 1 tRNA-Leu... 1026 bp Festuca sinensis QL-PLN-00-007 619 bp View
KY999938.1 nt Festuca sinensis isolate 2 tRNA-Leu... 1020 bp Festuca sinensis QL-PLN-00-007 619 bp View
KY999939.1 nt Festuca sinensis isolate 4 tRNA-Leu... 1043 bp Festuca sinensis QL-PLN-00-007 618 bp View
KY999940.1 nt Festuca sinensis isolate 5 tRNA-Leu... 1022 bp Festuca sinensis QL-PLN-00-007 619 bp View
KY999941.1 nt Festuca sinensis isolate 6 tRNA-Leu... 1024 bp Festuca sinensis QL-PLN-00-007 619 bp View
KY999942.1 nt Festuca sinensis isolate 7 tRNA-Leu... 1044 bp Festuca sinensis QL-PLN-00-007 619 bp View
KY999943.1 nt Festuca sinensis isolate 8 tRNA-Leu... 1025 bp Festuca sinensis QL-PLN-00-007 619 bp View
KY999944.1 nt Festuca sinensis isolate 10 tRNA-Le... 1043 bp Festuca sinensis QL-PLN-00-007 619 bp View
KY999945.1 nt Festuca sinensis isolate 41 tRNA-Le... 1024 bp Festuca sinensis QL-PLN-00-007 619 bp View
KY999946.1 nt Festuca kirelowii isolate 42 tRNA-L... 1020 bp Festuca rubra subsp. kirelowii QL-PLN-00-007 610 bp View
KY999947.1 nt Festuca sinensis isolate 57 tRNA-Le... 1026 bp Festuca sinensis QL-PLN-00-007 619 bp View
KY999948.1 nt Festuca kryloviana isolate 66 tRNA-... 1017 bp Festuca kryloviana QL-PLN-00-007 615 bp View
KY999949.1 nt Festuca kirelowii isolate 67 tRNA-L... 1020 bp Festuca rubra subsp. kirelowii QL-PLN-00-007 610 bp View
KY999950.1 nt Festuca kryloviana isolate 71 tRNA-... 1020 bp Festuca kryloviana QL-PLN-00-007 619 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.