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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ620157.1 nt Psydrax kraussioides chloroplast tr... 1521 bp Psydrax kraussioides QL-PLN-00-007 552 bp View
AJ620158.1 nt Psydrax livida chloroplast trnT-trn... 1680 bp Psydrax livida QL-PLN-00-007 552 bp View
AJ620159.1 nt Psydrax locuples chloroplast trnT-t... 1659 bp Psydrax locuples QL-PLN-00-007 542 bp View
AJ620160.1 nt Psydrax nitidum chloroplast trnT-tr... 1664 bp Psydrax nitida QL-PLN-00-007 552 bp View
AJ620161.1 nt Psydrax obovata chloroplast trnT-tr... 1655 bp Psydrax obovata QL-PLN-00-007 542 bp View
AJ620162.1 nt Psydrax parviflora chloroplast trnT... 1684 bp Psydrax parviflora QL-PLN-00-007 552 bp View
AJ620163.1 nt Psydrax schimperiana chloroplast tr... 1677 bp Psydrax schimperiana QL-PLN-00-007 552 bp View
AJ620164.1 nt Psydrax sp. A Luke and Luke 9031 ch... 1666 bp Psydrax sp. A Luke & Luke 9031 QL-PLN-00-007 542 bp View
AJ620166.1 nt Pygmaeothamnus zeyheri chloroplast ... 1783 bp Pygmaeothamnus zeyheri QL-PLN-00-007 552 bp View
AJ620169.1 nt Pyrostria phyllantoidea chloroplast... 1733 bp Pyrostria phyllanthoidea QL-PLN-00-007 552 bp View
AJ620170.1 nt Robynsia glabrata chloroplast trnT-... 1726 bp Robynsia glabrata QL-PLN-00-007 552 bp View
AJ620171.1 nt Rytigynia bagshawei chloroplast trn... 1741 bp Rytigynia bagshawei QL-PLN-00-007 552 bp View
AJ620172.1 nt Canthium bugoyense chloroplast trnT... 1720 bp Canthium bugoyense QL-PLN-00-007 552 bp View
AJ620173.1 nt Rytigynia fuscosetulosa chloroplast... 1764 bp Rytigynia fuscosetulosa QL-PLN-00-007 552 bp View
AJ620174.1 nt Canthium mrimaense chloroplast trnT... 1722 bp Canthium mrimaense QL-PLN-00-007 552 bp View
AJ620175.1 nt Rytigynia senegalensis chloroplast ... 1686 bp Rytigynia senegalensis QL-PLN-00-007 552 bp View
AJ620176.1 nt Scyphochlamys revoluta chloroplast ... 1735 bp Pyrostria revoluta QL-PLN-00-007 552 bp View
AJ620177.1 nt Tapiphyllum cinerascens chloroplast... 1722 bp Tapiphyllum cinerascens QL-PLN-00-007 556 bp View
AJ620178.1 nt Tapiphyllum velutinum chloroplast t... 1717 bp Tapiphyllum velutinum QL-PLN-00-007 552 bp View
AJ620179.1 nt Vangueria apiculata chloroplast trn... 1729 bp Vangueria apiculata QL-PLN-00-007 556 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.