Match details
Record ID: |
AJ620161.1 |
Database: |
nt |
Go to original record |
Description: |
Psydrax obovata chloroplast trnT-trnL IGS (partial), tRNA-Leu (UAA) gene and trnL-trnF IGS (partial), specimen voucher Bremer and Bremer (3762) |
Taxon: |
Psydrax obovata |
Original size: |
1655 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
781 |
1322 |
+ |
542 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaag ggataggtgc agagactcaa tggaagctgt tctaacaaat
201 ggagttggct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251 ataaaacgta tacgtattga atactatatc aaatgattaa tgacgactcg
301 actgaatctg tattttttat atgaaaatgg aagaatagat tccacattga
351 agaaagaatc gaatattcat tgattaaatg attcactcca tagtctgata
401 gatcttttca agaattgatt aatcggacga gaataaagat agagtcccgt
451 tctacatgtc aatgtcggca acaatgaaat ttatagtaag aggaaaatcc
501 gtcgacttta aaaatcgtga gggttcaagt ccctctatcc cc
View other 5 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.44e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
542 |
523 |
2.44e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.