Match details
Record ID:
AJ620164.1
Database:
nt
Go to original record
Description:
Psydrax sp. A Luke and Luke 9031 chloroplast trnT-trnL IGS (partial), tRNA-Leu (UAA) gene and trnL-trnF IGS (partial), specimen voucher Luke and Luke 9031 (UPS)
Taxon:
Psydrax sp. A Luke & Luke 9031
Original size:
1666 bp
View other 20492 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
793
1334
+
542 bp
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaag ggataggtgc agagactcaa tggaagctgt tctaacaaat
201 ggagttggct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251 ataaaacgta tacgtattga atactatatc aaatgattaa tgacgactcg
301 actgaatctg tattttttat atgaaaatgg aagaatagat tccacattga
351 agaaagaatc gaatattcat tgattaaatg attcactcca tagtctgata
401 gatcttttca agaattgatt aatcggacga gaataaagat agagtcccgt
451 tctacatgtc aatgtcggca acaatgaaat ttatagtaag aggaaaatcc
501 gtcgacttta aaaatcgtga gggttcaagt ccctctatcc cc
View other 5 matches with an identical amplicon
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
20 bp
0
0
1
20
2.44e-08
primerB
100.0
20 bp
0
0
542
523
2.44e-08
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.