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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY596133.1 nt Andropogon chinensis chloroplast, c... 138817 bp Andropogon chinensis QL-PLN-00-007 525 bp View
KY596135.1 nt Schizachyrium brevifolium chloropla... 138028 bp Schizachyrium brevifolium QL-PLN-00-007 525 bp View
KY596137.1 nt Schizachyrium sanguineum chloroplas... 139264 bp Schizachyrium sanguineum QL-PLN-00-007 525 bp View
KY596138.1 nt Arthraxon prionodes chloroplast, co... 140494 bp Arthraxon prionodes QL-PLN-00-007 525 bp View
KY596140.1 nt Schizachyrium sanguineum chloroplas... 138373 bp Schizachyrium sanguineum QL-PLN-00-007 535 bp View
KY596141.1 nt Schizachyrium sanguineum chloroplas... 139261 bp Schizachyrium sanguineum QL-PLN-00-007 525 bp View
KY596144.1 nt Andropogon fastigiatus chloroplast,... 138666 bp Diectomis fastigiata QL-PLN-00-007 525 bp View
KY596150.1 nt Schizachyrium brevifolium chloropla... 138042 bp Schizachyrium brevifolium QL-PLN-00-007 525 bp View
KY596151.1 nt Schizachyrium brevifolium chloropla... 137974 bp Schizachyrium brevifolium QL-PLN-00-007 525 bp View
KY596152.1 nt Andropogon fastigiatus chloroplast,... 138673 bp Diectomis fastigiata QL-PLN-00-007 525 bp View
KY596156.1 nt Hyparrhenia rufa chloroplast, compl... 139269 bp Hyparrhenia rufa QL-PLN-00-007 530 bp View
KY596157.1 nt Pseudosorghum fasciculare chloropla... 140538 bp Pseudosorghum fasciculare QL-PLN-00-007 601 bp View
KY596160.1 nt Coix lacryma-jobi chloroplast, comp... 140863 bp Coix lacryma-jobi QL-PLN-00-007 524 bp View
KY596165.1 nt Schizachyrium sanguineum chloroplas... 139267 bp Schizachyrium sanguineum QL-PLN-00-007 525 bp View
KY596167.1 nt Andropogon burmanicus chloroplast, ... 140838 bp Andropogon burmanicus QL-PLN-00-007 523 bp View
KY596168.1 nt Schizachyrium brevifolium chloropla... 138027 bp Schizachyrium brevifolium QL-PLN-00-007 525 bp View
KY596180.1 nt Andropogon fastigiatus chloroplast,... 138846 bp Diectomis fastigiata QL-PLN-00-007 525 bp View
KY596181.1 nt Schizachyrium sanguineum chloroplas... 138368 bp Schizachyrium sanguineum QL-PLN-00-007 535 bp View
KY596185.1 nt Arthraxon lanceolatus chloroplast, ... 140417 bp Arthraxon lanceolatus QL-PLN-00-007 525 bp View
KY610123.1 nt Chrysopogon zizanioides cultivar Su... 139971 bp Chrysopogon zizanioides QL-PLN-00-007 525 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.