Match details
Record ID: |
KY596167.1 |
Database: |
nt |
Go to original record |
Description: |
Andropogon burmanicus chloroplast, complete genome. |
Taxon: |
Andropogon burmanicus |
Original size: |
140838 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49248 |
49770 |
+ |
523 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttta aaaacaagtg gttctcaaac
151 tagaacccaa aggaaaagga taggtgcaga gactcaatgg aagctgttct
201 aacgaattga agtaataacg attaatcaca gaacccttat tataatatag
251 gttctttatt ttatttttag aatgaaatta ggaatgatta tgaaatagaa
301 aattcataat ttttttagaa ttattgtgaa tctattccaa tcaatattga
351 gtaatcaaat ccttcaattc attgttttcg agatctttta aaaagtggat
401 taatcggacg aggataaaga gagagtccca ttctacatgt caatactgac
451 aacaatgaaa tttctagtaa aaggaaaatc cgtcgacttt ataagtcgtg
501 agggttcaag tccctctatc ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.35e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
523 |
504 |
2.35e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.