Match details
Record ID: |
KY596181.1 |
Database: |
nt |
Go to original record |
Description: |
Schizachyrium sanguineum chloroplast, complete genome. |
Taxon: |
Schizachyrium sanguineum |
Original size: |
138368 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47493 |
48027 |
+ |
535 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagc ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaataac gattaatcac agaacccata ttataatata
251 ggttctttat tttattttta gaatgaaatt aggaaggatt atgaaataga
301 aaattcataa tttttttaga attagaatta ttgtgaatct attccaatcg
351 aatattgagt aatcaaatcc ttcaattcat tgttttcgag atcttttaaa
401 aaaaaagtgg attaatcgga cgaggataaa gagagagtcc cattctacat
451 gtcaatactg acaacaatga aatttctagt aaaaggaaaa tccgtcgact
501 ttataagtcg tgagggttca agtccctcta tcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.41e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
535 |
516 |
2.41e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.