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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KX078533.1 nt Rhodiola rosea genotype Fagaras tRN... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078534.1 nt Rhodiola rosea genotype Fedaia tRNA... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078535.1 nt Rhodiola rosea genotype Grau Roig t... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078536.1 nt Rhodiola rosea genotype Halti tRNA-... 963 bp Rhodiola rosea QL-PLN-00-007 604 bp View
KX078538.1 nt Rhodiola rosea genotype Juclar tRNA... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078539.1 nt Rhodiola rosea genotype Kilpisjarvi... 963 bp Rhodiola rosea QL-PLN-00-007 604 bp View
KX078540.1 nt Rhodiola rosea genotype Kokorja Alt... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078541.1 nt Rhodiola rosea genotype Kola tRNA-L... 963 bp Rhodiola rosea QL-PLN-00-007 604 bp View
KX078542.1 nt Rhodiola rosea genotype Kvaloya tRN... 963 bp Rhodiola rosea QL-PLN-00-007 604 bp View
KX078543.1 nt Rhodiola rosea genotype Lomnicky st... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078544.1 nt Rhodiola rosea genotype Mattmark tR... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078545.1 nt Rhodiola rosea genotype Mengusovska... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078546.1 nt Rhodiola rosea genotype Northern Ur... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078547.1 nt Rhodiola rosea genotype Novaya Zeml... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078549.1 nt Rhodiola rosea genotype Piano dei C... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078551.1 nt Rhodiola rosea genotype Rila tRNA-L... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078552.1 nt Rhodiola rosea genotype Sligo tRNA-... 963 bp Rhodiola rosea QL-PLN-00-007 604 bp View
KX078553.1 nt Rhodiola rosea genotype Tara Altai ... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078554.1 nt Rhodiola rosea genotype Tavargatai ... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078555.1 nt Rhodiola rosea genotype Tonale tRNA... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.