Match details
Record ID: |
KX078553.1 |
Database: |
nt |
Go to original record |
Description: |
Rhodiola rosea genotype Tara Altai tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Rhodiola rosea |
Original size: |
921 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
585 |
+ |
585 bp |
|
1 cgaaatcggt agacgctacg gacttaattg tattgagcct tggtatggaa
51 acctactaag tgaaaacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ttcttttccg aaaccaaacc caaatacagg
151 ggttcaaaaa gcgcgaataa aaaaggatag gtgcagagac tcaacggaag
201 ttgttctaac aaatagagtt tactatgttg cattgacaaa ggaatctttt
251 cattgaaact ccagaaagga tgaaggataa atcttaataa acatatgtat
301 acctaccgaa atagtatatc aaatgattaa tgacgactca aatttttatt
351 ttaaaatgaa agaattgtta ggaagcgatt ccgagttgaa gaaagaatcg
401 actcttcatt gataaaataa gtgtcactcc acagtctgag agatcttttg
451 acgaactgag attaatcgga cgagaataaa gatagagtcc cattatacat
501 gtcaatactg acaacaagga aattgatagt aaaaggaaaa tccgtcgact
551 ttagaaatca tgagggttca agtccctcta tcccc
View other 29 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.63e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
585 |
566 |
2.63e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.