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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KU763493.1 nt Poa hachadoensis var. pilosa vouche... 1790 bp Poa hachadoensis var. pilosa QL-PLN-00-007 612 bp View
KU763510.1 nt Poa mendocina voucher Peterson et a... 1790 bp Poa mendocina QL-PLN-00-007 612 bp View
KU763514.2 nt Poa occidentalis voucher Peterson e... 1805 bp Poa occidentalis QL-PLN-00-007 618 bp View
KU763517.1 nt Poa pauciflora voucher Peterson et ... 1784 bp Poa pauciflora QL-PLN-00-007 619 bp View
KU904222.1 nt Dianthus caryophyllus chloroplast, ... 149595 bp Dianthus caryophyllus QL-PLN-00-007 619 bp View
KU961860.1 nt Eriochrysis villosa chloroplast, pa... 140404 bp Eriochrysis villosa QL-PLN-00-007 525 bp View
KU961861.1 nt Eriochrysis cayennensis chloroplast... 140380 bp Eriochrysis cayennensis QL-PLN-00-007 525 bp View
KU974011.1 nt Cruciata glabra tRNA-Phe (trnF), tr... 549 bp Cruciata glabra QL-PLN-00-007 547 bp View
KX014626.1 nt Gynostemma pentaphyllum chloroplast... 157654 bp Gynostemma pentaphyllum QL-PLN-00-007 609 bp View
KX078522.1 nt Rhodiola rosea genotype Akureyri tR... 963 bp Rhodiola rosea QL-PLN-00-007 604 bp View
KX078523.1 nt Rhodiola rosea genotype Ala Archa t... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078524.1 nt Rhodiola rosea genotype Anadir tRNA... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078525.1 nt Rhodiola rosea genotype Binntal tRN... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078526.1 nt Rhodiola rosea genotype Calimani tR... 933 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078527.1 nt Rhodiola rosea genotype Chopok tRNA... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078528.1 nt Rhodiola rosea genotype Cindrel tRN... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078529.1 nt Rhodiola rosea genotype Col Bricon ... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078530.1 nt Rhodiola rosea genotype Dingel tRNA... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078531.1 nt Rhodiola rosea genotype Durrenstein... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX078532.1 nt Rhodiola rosea genotype Erdemolo tR... 921 bp Rhodiola rosea QL-PLN-00-007 585 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.