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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KM524088.1 nt Poa thessala voucher CAN:Gillespie ... 1760 bp Poa thessala QL-PLN-00-007 563 bp View
KM524089.1 nt Poa ursina voucher CAN:Hajkova et a... 1778 bp Poa ursina QL-PLN-00-007 611 bp View
KM524090.1 nt Puccinellia arctica voucher CAN:Gil... 1707 bp Puccinellia arctica QL-PLN-00-007 611 bp View
KM524091.1 nt Puccinellia borealis voucher CAN:Gi... 1713 bp Puccinellia borealis QL-PLN-00-007 611 bp View
KM524093.1 nt Puccinellia deschampsioides voucher... 1684 bp Puccinellia deschampsioides QL-PLN-00-007 611 bp View
KM524094.1 nt Puccinellia interior voucher CAN:Gi... 1713 bp Puccinellia interior QL-PLN-00-007 611 bp View
KM524095.1 nt Puccinellia lemmonii voucher BH:Dav... 1706 bp Puccinellia lemmonii QL-PLN-00-007 611 bp View
KM524096.1 nt Puccinellia magellanica voucher US:... 1706 bp Puccinellia magellanica QL-PLN-00-007 611 bp View
KM524097.1 nt Puccinellia nutkaensis voucher US:S... 1713 bp Puccinellia nutkaensis QL-PLN-00-007 611 bp View
KM524098.1 nt Puccinellia phryganodes voucher CAN... 1706 bp Puccinellia phryganodes QL-PLN-00-007 611 bp View
KM524099.1 nt Puccinellia pusilla voucher US:Sore... 1713 bp Puccinellia pusilla QL-PLN-00-007 616 bp View
KM524100.2 nt Puccinellia tenella subsp. langeana... 1707 bp Puccinellia tenella subsp. langeana QL-PLN-00-007 611 bp View
KM524101.1 nt Puccinellia wrightii voucher O:Elve... 1706 bp Puccinellia wrightii QL-PLN-00-007 611 bp View
KM524102.1 nt Sclerochloa dura voucher US:Soreng ... 1692 bp Sclerochloa dura QL-PLN-00-007 609 bp View
KM524103.1 nt Scolochloa festucacea voucher UPS:H... 1774 bp Scolochloa festucacea QL-PLN-00-007 618 bp View
KM524104.1 nt Ventenata dubia voucher CAN:Gillesp... 1788 bp Ventenata dubia QL-PLN-00-007 618 bp View
KM592094.1 nt Cladoceras subcapitatum voucher Luk... 1685 bp Cladoceras subcapitatum QL-PLN-00-007 567 bp View
KM592095.1 nt Coleactina papalis voucher Dessein ... 1679 bp Leptactina papalis QL-PLN-00-007 567 bp View
KM592096.1 nt Coptosperma borbonicum voucher De B... 1662 bp Coptosperma borbonicum QL-PLN-00-007 567 bp View
KM592097.1 nt Coptosperma littorale voucher Luke ... 1664 bp Coptosperma littorale QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.