Match details
Record ID: |
KM524095.1 |
Database: |
nt |
Go to original record |
Description: |
Puccinellia lemmonii voucher BH:Davis 414 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Puccinellia lemmonii |
Original size: |
1706 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
813 |
1423 |
+ |
611 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacctgg gggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtgttg ttagtggaat tccttctaaa
251 ttcgagaagg aagggcttta tacatctaat aaacacctat agatactgcc
301 atagcaaacg attaatcaca gaacccatat tataatatag gttctttatt
351 cttttttaga atcaaataga aatgattatg aaataaaaaa ttcataattt
401 ttttagaatt attgtgaatc cattcccatc gaatatttag taatcaaatc
451 cttcaattca aagttttgag gtctttaaaa aagtagatta atcgaacgag
501 gacaaagaga gagtcccatt ctacatgtca atactgacaa caatgaaatt
551 tctagtaaaa ggaaaatccg tcgactttat aagtcgtgag ggttcaagtc
601 cctctatccc c
View other 22 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.75e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
611 |
592 |
2.75e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.