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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 611 bp 
1     cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51    acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101   gggcaatcct gagccaaatc cgtgttttga gaaaacctgg gggttctcga
151   actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201   ctaacgaatc gagttaatta cgttgtgttg ttagtggaat tccttctaaa
251   ttcgagaagg aagggcttta tacatctaat aaacacctat agatactgcc
301   atagcaaacg attaatcaca gaacccatat tataatatag gttctttatt
351   cttttttaga atcaaataga aatgattatg aaataaaaaa ttcataattt
401   ttttagaatt attgtgaatc cattcccatc gaatatttag taatcaaatc
451   cttcaattca aagttttgag gtctttaaaa aagtagatta atcgaacgag
501   gacaaagaga gagtcccatt ctacatgtca atactgacaa caatgaaatt
551   tctagtaaaa ggaaaatccg tcgactttat aagtcgtgag ggttcaagtc
601   cctctatccc c

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ860595.1 nt Puccinellia interior tRNA-Leu (trnL... 611 bp Puccinellia interior QL-PLN-00-007 611 bp View
OK247974.1 nt Puccinellia frigida trnT-trnL inter... 1700 bp Puccinellia frigida QL-PLN-00-007 611 bp View
OK247988.1 nt Puccinellia vaginata trnT-trnL inte... 1708 bp Puccinellia vaginata QL-PLN-00-007 611 bp View
DQ353959.1 nt Puccinellia stricta voucher Peterso... 1808 bp Puccinellia stricta QL-PLN-00-007 611 bp View
EU854591.1 nt Puccinellia vahliana tRNA-Thr (trnT... 1723 bp Puccinellia vahliana QL-PLN-00-007 611 bp View
KM524100.2 nt Puccinellia tenella subsp. langeana... 1707 bp Puccinellia tenella subsp. langeana QL-PLN-00-007 611 bp View
OK247965.1 nt Puccinellia andersonii trnT-trnL in... 1708 bp Puccinellia andersonii QL-PLN-00-007 611 bp View
OK247968.1 nt Puccinellia banksiensis trnT-trnL i... 1648 bp Puccinellia banksiensis QL-PLN-00-007 611 bp View
OK247970.1 nt Puccinellia borealis trnT-trnL inte... 1715 bp Puccinellia borealis QL-PLN-00-007 611 bp View
OK247971.1 nt Puccinellia convoluta trnT-trnL int... 1708 bp Puccinellia convoluta QL-PLN-00-007 611 bp View
OK247973.1 nt Puccinellia festuciformis trnT-trnL... 1708 bp Puccinellia festuciformis QL-PLN-00-007 611 bp View
OK247976.1 nt Puccinellia groenlandica trnT-trnL ... 1708 bp Puccinellia groenlandica QL-PLN-00-007 611 bp View
OK247977.1 nt Puccinellia grossheimiana trnT-trnL... 1699 bp Puccinellia grossheimiana QL-PLN-00-007 611 bp View
OK247979.1 nt Puccinellia intermedia trnT-trnL in... 1705 bp Puccinellia intermedia QL-PLN-00-007 611 bp View
OK247980.1 nt Puccinellia maritima trnT-trnL inte... 1707 bp Puccinellia maritima QL-PLN-00-007 611 bp View
OK247982.1 nt Puccinellia nuttalliana trnT-trnL i... 1707 bp Puccinellia nuttalliana QL-PLN-00-007 611 bp View
OK247984.1 nt Puccinellia pumila trnT-trnL interg... 1713 bp Puccinellia pumila QL-PLN-00-007 611 bp View
OK247985.1 nt Puccinellia pusilla trnT-trnL inter... 1706 bp Puccinellia pusilla QL-PLN-00-007 611 bp View
OK247986.1 nt Puccinellia rupestris trnT-trnL int... 1707 bp Puccinellia rupestris QL-PLN-00-007 611 bp View
KM524090.1 nt Puccinellia arctica voucher CAN:Gil... 1707 bp Puccinellia arctica QL-PLN-00-007 611 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.