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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ815589.1 nt Coptosperma bernierianum voucher Sc... 1721 bp Coptosperma bernierianum QL-PLN-00-007 567 bp View
KJ815590.1 nt Coptosperma borbonicum voucher Krog... 1663 bp Coptosperma borbonicum QL-PLN-00-007 567 bp View
KJ815592.1 nt Coptosperma cymosum voucher Razafim... 1665 bp Coptosperma cymosum QL-PLN-00-007 567 bp View
KJ815593.1 nt Coptosperma graveolens voucher Luke... 1676 bp Coptosperma graveolens QL-PLN-00-007 566 bp View
KJ815594.1 nt Coptosperma humblotii voucher Breme... 1612 bp Coptosperma humblotii QL-PLN-00-007 567 bp View
KJ815595.1 nt Coptosperma littorale voucher Luke ... 1379 bp Coptosperma littorale QL-PLN-00-007 567 bp View
KJ815596.1 nt Coptosperma madagascariense voucher... 1700 bp Coptosperma madagascariense QL-PLN-00-007 567 bp View
KJ815597.1 nt Coptosperma mitochondrioides vouche... 1670 bp Coptosperma mitochondrioides QL-PLN-00-007 567 bp View
KJ815598.1 nt Coptosperma nigrescens voucher Luke... 1682 bp Coptosperma nigrescens QL-PLN-00-007 567 bp View
KJ815599.1 nt Coptosperma nigrescens voucher Moul... 1683 bp Coptosperma nigrescens QL-PLN-00-007 567 bp View
KJ815600.1 nt Coptosperma rhodesiacum voucher Bre... 1677 bp Coptosperma rhodesiacum QL-PLN-00-007 567 bp View
KJ815601.1 nt Coptosperma sp. Karehed et al. 227 ... 1677 bp Coptosperma sp. Karehed et al. 227 QL-PLN-00-007 567 bp View
KJ815602.1 nt Coptosperma sp. Karehed et al. 191 ... 1630 bp Coptosperma sp. Karehed et al. 191 QL-PLN-00-007 567 bp View
KJ815603.1 nt Coptosperma sp. Kainulainen et al. ... 1721 bp Coptosperma sp. Kainulainen et al. 76 QL-PLN-00-007 567 bp View
KJ815604.1 nt Coptosperma sp. Bremer et al. 5297 ... 1695 bp Coptosperma sp. Bremer et al. 5297 QL-PLN-00-007 567 bp View
KJ815606.1 nt Coptosperma peteri voucher Lovett &... 1676 bp Coptosperma peteri QL-PLN-00-007 563 bp View
KJ815607.1 nt Coptosperma supra-axillare voucher ... 1622 bp Coptosperma supra-axillare QL-PLN-00-007 566 bp View
KJ815608.1 nt Coptosperma supra-axillare voucher ... 1669 bp Coptosperma supra-axillare QL-PLN-00-007 567 bp View
KJ815609.1 nt Coptosperma supra-axillare voucher ... 1661 bp Coptosperma supra-axillare QL-PLN-00-007 567 bp View
KJ815610.1 nt Coptosperma sp. Razafimandimbison e... 1677 bp Coptosperma sp. Razafimandimbison et al. 994 QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.