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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ815538.1 nt Hyperacanthus mandenensis voucher K... 1715 bp Hyperacanthus mandenensis QL-PLN-00-007 567 bp View
KJ815539.1 nt Hyperacanthus perrieri voucher Raza... 1718 bp Hyperacanthus perrieri QL-PLN-00-007 567 bp View
KJ815540.1 nt Hyperacanthus poivrei voucher Razaf... 1707 bp Hyperacanthus poivrei QL-PLN-00-007 567 bp View
KJ815541.1 nt Hyperacanthus sp. Razafimandimbison... 1703 bp Hyperacanthus sp. Razafimandimbison et al. 1008 QL-PLN-00-007 567 bp View
KJ815542.1 nt Hyperacanthus sp. Razafimandimbison... 1669 bp Hyperacanthus sp. Razafimandimbison et al. 1135 QL-PLN-00-007 567 bp View
KJ815545.1 nt Cremaspora triflora voucher Merello... 1647 bp Cremaspora triflora QL-PLN-00-007 565 bp View
KJ815546.1 nt Cremaspora triflora voucher Pignal ... 1679 bp Cremaspora triflora QL-PLN-00-007 567 bp View
KJ815547.1 nt Fernelia buxifolia voucher Kroger e... 1717 bp Fernelia buxifolia QL-PLN-00-007 565 bp View
KJ815548.1 nt Fernelia buxifolia voucher Kainulai... 1714 bp Fernelia buxifolia QL-PLN-00-007 565 bp View
KJ815549.1 nt Fernelia decipiens voucher Razafima... 1716 bp Fernelia decipiens QL-PLN-00-007 565 bp View
KJ815550.1 nt Fernelia obovata voucher Kroger et ... 1656 bp Fernelia obovata QL-PLN-00-007 565 bp View
KJ815552.1 nt Kraussia kirkii voucher Luke 9034 (... 1720 bp Kraussia kirkii QL-PLN-00-007 567 bp View
KJ815554.1 nt Kraussia speciosa voucher Luke 9026... 1711 bp Kraussia speciosa QL-PLN-00-007 567 bp View
KJ815557.1 nt Canephora axillaris voucher Kainula... 1663 bp Canephora axillaris QL-PLN-00-007 572 bp View
KJ815558.1 nt Canephora maroana voucher Bremer et... 1691 bp Canephora maroana QL-PLN-00-007 572 bp View
KJ815559.1 nt Chapelieria madagascariensis vouche... 1676 bp Chapelieria madagascariensis QL-PLN-00-007 574 bp View
KJ815560.1 nt Chapelieria magna voucher Razafiman... 1680 bp Chapelieria magna QL-PLN-00-007 574 bp View
KJ815563.1 nt Flagenium sp. Razafimandimbison & K... 1719 bp Flagenium sp. Razafimandimbison & Kroger 947 QL-PLN-00-007 567 bp View
KJ815564.1 nt Flagenium farafanganense voucher Ka... 1685 bp Flagenium farafanganense QL-PLN-00-007 567 bp View
KJ815565.1 nt Flagenium petrikense voucher Kainul... 1663 bp Flagenium petrikense QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.