Match details
Record ID: |
KJ815549.1 |
Database: |
nt |
Go to original record |
Description: |
Fernelia decipiens voucher Razafimandimbison et al. 818 (S) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL-UAA) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Fernelia decipiens |
Original size: |
1716 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
786 |
1350 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaaa ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttggct gcgttagtag agaaatcttt ccatctaaaa ttccgaaagg
251 ataaagtgaa ggataaacgt atatatgtat tgaatactat atcaaatgat
301 taatgacgac tcggctgaat ctgtattttt tatatgaaaa cggaagaatt
351 ggtgtgaata gattccacat tgaagaaaga atcgagtatt cattgatcaa
401 atgattcact ccatagtctg atagatcttt tcaagaattg attaatcgga
451 cgagaataaa gatagagtcc cgttctacat gtcaacgtcg gcaacaatga
501 aatttatagt aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca
551 agtccctcta tcccc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.