Match details
Record ID: |
KJ815560.1 |
Database: |
nt |
Go to original record |
Description: |
Chapelieria magna voucher Razafimandimbison et al. 1240 (S) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL-UAA) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Chapelieria magna |
Original size: |
1680 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
764 |
1337 |
+ |
574 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaacgaa accaaaggtt
151 cagaaagtga aaaacggata ggtgcagaga ctcaacggaa gctgttctaa
201 caaatggagt tggctgcgtt agtagagaaa tctttccatc taaaattccg
251 aaaggataaa gtgaaggata aacgtatata tatatgtatt gaatactata
301 tcaaatgatt aatgacgact caactgaatc tgtatttttt atatgaaaac
351 ggaagaattg gtgtgaatag attccacatt gaagaaagaa tcgaatattc
401 attgatcaaa tgattcactc catagtctga tagatctttt caagaattga
451 ttaatcggac gagaataaag atagagtccc gttctacatg tcaatgtcgg
501 caacaatgaa atttatagta agaggaaaat ccgtcgactt taaaaatcgt
551 gagggttcaa gtccctctat cccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.58e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
574 |
555 |
2.58e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.