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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ815482.1 nt Rothmannia engleriana voucher Luke ... 1629 bp Rothmannia engleriana QL-PLN-00-007 562 bp View
KJ815484.1 nt Rothmannia fischeri voucher Luke 83... 1719 bp Rothmannia fischeri QL-PLN-00-007 567 bp View
KJ815485.1 nt Rothmannia globosa voucher Bremer 4... 1693 bp Rothmannia globosa QL-PLN-00-007 567 bp View
KJ815488.1 nt Rothmannia macrosiphon voucher Luke... 1729 bp Rothmannia macrosiphon QL-PLN-00-007 567 bp View
KJ815489.1 nt Rothmannia manganjae voucher Sallu ... 1720 bp Rothmannia manganjae QL-PLN-00-007 567 bp View
KJ815493.1 nt Rothmannia urcelliformis voucher Lu... 1742 bp Rothmannia urcelliformis QL-PLN-00-007 569 bp View
KJ815496.1 nt Aidia congesta voucher Mouly et al.... 1086 bp Aidia congesta QL-PLN-00-007 567 bp View
KJ815497.1 nt Aidia micrantha trnT-trnL intergeni... 1695 bp Aidia micrantha QL-PLN-00-007 567 bp View
KJ815498.1 nt Aidia pycnantha voucher Kroger et a... 1630 bp Aidia pycnantha QL-PLN-00-007 567 bp View
KJ815499.1 nt Vidalasia fusca voucher Larsen 4327... 1703 bp Vidalasia fusca QL-PLN-00-007 567 bp View
KJ815500.1 nt Catunaregam nilotica voucher Luke 8... 1703 bp Catunaregam nilotica QL-PLN-00-007 567 bp View
KJ815501.1 nt Catunaregam sp. Razafimandimbison e... 1678 bp Catunaregam sp. Razafimandimbison et al. 526 QL-PLN-00-007 567 bp View
KJ815502.1 nt Catunaregam spinosa voucher Razafim... 1537 bp Catunaregam spinosa QL-PLN-00-007 567 bp View
KJ815504.1 nt Gardenia aqualla voucher Kristensen... 1647 bp Gardenia aqualla QL-PLN-00-007 550 bp View
KJ815505.1 nt Gardenia aubryi voucher Mouly 194 (... 1656 bp Gardenia aubryi QL-PLN-00-007 550 bp View
KJ815506.1 nt Gardenia brighamii voucher Skottsbe... 1629 bp Gardenia brighamii QL-PLN-00-007 550 bp View
KJ815507.1 nt Gardenia carinata voucher Larsen 41... 1653 bp Gardenia carinata QL-PLN-00-007 550 bp View
KJ815508.1 nt Gardenia colnettiana voucher Poulla... 1640 bp Gardenia colnettiana QL-PLN-00-007 567 bp View
KJ815509.1 nt Gardenia conferta voucher Mouly 337... 1642 bp Gardenia conferta QL-PLN-00-007 567 bp View
KJ815510.1 nt Gardenia cornuta voucher Andreasen ... 1660 bp Gardenia cornuta QL-PLN-00-007 550 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.