Match details
Record ID: |
KJ815501.1 |
Database: |
nt |
Go to original record |
Description: |
Catunaregam sp. Razafimandimbison et al. 526 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL-UAA) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Catunaregam sp. Razafimandimbison et al. 526 |
Original size: |
1678 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
781 |
1347 |
+ |
567 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tagtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaaa ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttggct gcgttagtag agaaatcttt ccatctaaaa ttccgaaagg
251 ataaagtgaa ggataaacgt atatatacgt attgaatact atatcaaatg
301 attaatgacg actcgactga atctgtattt tttatatgaa aacggaagaa
351 ttggtgtgaa tagattccac attgaagaaa gaatcgaata ttcattgatc
401 aaatgattca ctccatagtc tgatagatct tttcaagaat tgattaatcg
451 aacgagaata aagatagagt cccgttctac atgtcaatgt cggcaacaat
501 gaaatttata gtaagaggaa aatccgtcga ctttaaaaat cgtgagggtt
551 caagtccctc tatcccc
View other 6 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
567 |
548 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.