JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

567 bp

1     cgaaatcggt agacgctacg gacttaattg aattgagcct tagtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151   agtgaaaaaa ggataggtgc agagactcaa cggaagctgt tctaacaaat
201   ggagttggct gcgttagtag agaaatcttt ccatctaaaa ttccgaaagg
251   ataaagtgaa ggataaacgt atatatacgt attgaatact atatcaaatg
301   attaatgacg actcgactga atctgtattt tttatatgaa aacggaagaa
351   ttggtgtgaa tagattccac attgaagaaa gaatcgaata ttcattgatc
401   aaatgattca ctccatagtc tgatagatct tttcaagaat tgattaatcg
451   aacgagaata aagatagagt cccgttctac atgtcaatgt cggcaacaat
501   gaaatttata gtaagaggaa aatccgtcga ctttaaaaat cgtgagggtt
551   caagtccctc tatcccc

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
KJ136953.1	nt	Catunaregam nilotica voucher Luke 8...	1747 bp	Catunaregam nilotica	QL-PLN-00-007	567 bp	View
HM164315.1	nt	Catunaregam spinosa voucher Q. Luke...	1723 bp	Catunaregam spinosa	QL-PLN-00-007	567 bp	View
KF965178.1	nt	Catunaregam spinosa isolate AF100 t...	1721 bp	Catunaregam spinosa	QL-PLN-00-007	567 bp	View
KF965188.1	nt	Deccania pubescens isolate BR085 tr...	1258 bp	Deccania pubescens	QL-PLN-00-007	567 bp	View
KJ815500.1	nt	Catunaregam nilotica voucher Luke 8...	1703 bp	Catunaregam nilotica	QL-PLN-00-007	567 bp	View
KJ815501.1	nt	Catunaregam sp. Razafimandimbison e...	1678 bp	Catunaregam sp. Razafimandimbison et al. 526	QL-PLN-00-007	567 bp	View
MK165273.1	nt	Catunaregam nilotica voucher de Wil...	1693 bp	Catunaregam nilotica	QL-PLN-00-007	567 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.