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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ815429.1 nt Coffea mannii trnT-trnL intergenic ... 1643 bp Coffea mannii QL-PLN-00-007 571 bp View
KJ815430.1 nt Coffea mauritiana voucher Kroger et... 1678 bp Coffea mauritiana QL-PLN-00-007 570 bp View
KJ815431.1 nt Coffea mauritiana voucher Kainulain... 1689 bp Coffea mauritiana QL-PLN-00-007 570 bp View
KJ815432.1 nt Coffea mcphersonii voucher Bremer e... 1182 bp Coffea mcphersonii QL-PLN-00-007 570 bp View
KJ815433.1 nt Coffea melanocarpa voucher Bremer 2... 1709 bp Coffea melanocarpa QL-PLN-00-007 571 bp View
KJ815434.1 nt Coffea millotii voucher Kainulainen... 1666 bp Coffea millotii QL-PLN-00-007 570 bp View
KJ815435.1 nt Coffea mogeneti voucher Karehed et ... 1703 bp Coffea mogeneti QL-PLN-00-007 570 bp View
KJ815436.1 nt Coffea mongensis voucher Luke 9212 ... 1677 bp Coffea mongensis QL-PLN-00-007 570 bp View
KJ815437.1 nt Coffea mufindiensis voucher Luke 92... 1695 bp Coffea mufindiensis QL-PLN-00-007 570 bp View
KJ815438.1 nt Coffea myrtifolia voucher Kroger et... 1686 bp Coffea myrtifolia QL-PLN-00-007 570 bp View
KJ815439.1 nt Coffea perrieri voucher Razafimandi... 1670 bp Coffea perrieri QL-PLN-00-007 570 bp View
KJ815442.1 nt Coffea resinosa voucher Kainulainen... 1606 bp Coffea resinosa QL-PLN-00-007 570 bp View
KJ815444.1 nt Coffea richardii voucher Razafimand... 1686 bp Coffea richardii QL-PLN-00-007 570 bp View
KJ815445.1 nt Coffea sambavensis voucher Rabevohi... 1707 bp Coffea sambavensis QL-PLN-00-007 570 bp View
KJ815446.1 nt Coffea semsei voucher Luke 9260 (UP... 1700 bp Coffea semsei QL-PLN-00-007 575 bp View
KJ815447.1 nt Coffea tricalysioides voucher Breme... 1707 bp Coffea tricalysioides QL-PLN-00-007 570 bp View
KJ815448.1 nt Coffea betamponensis voucher Razafi... 1707 bp Coffea betamponensis QL-PLN-00-007 570 bp View
KJ815449.1 nt Coffea sp. Kainulainen et al. 133 t... 1676 bp Coffea sp. Kainulainen et al. 133 QL-PLN-00-007 570 bp View
KJ815450.1 nt Coffea sp. Luke 9538 trnT-trnL inte... 1704 bp Coffea sp. Luke 9538 QL-PLN-00-007 570 bp View
KJ815452.1 nt Empogona bequaertii voucher Walters... 1696 bp Empogona bequaertii QL-PLN-00-007 563 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.