Match details
Record ID: |
KJ815438.1 |
Database: |
nt |
Go to original record |
Description: |
Coffea myrtifolia voucher Kroger et al. 52 (S) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL-UAA) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Coffea myrtifolia |
Original size: |
1686 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
759 |
1328 |
+ |
570 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggaaaggtt
151 cagaaagtga aaaaaggata ggtgcagaga ctcaacggaa gctgttctaa
201 caaatggagt tagctgcgtt agtagagaaa tctttccatc taaaattccg
251 aaaggataaa gtgaaggata aacgtatata cgtattgaat actatattaa
301 atgattaatg acgactcaac tgaatctgta ttttttatat aaaaatggaa
351 gaattggtgt gaatagattc cacattgaag aaagaatcga atattcattg
401 atcaaataat tcactccata gtctgataga tcttttcaag aattgattaa
451 tcggacgaga ataaagatag agtcccgttc tacatgtcaa tgtcggcaac
501 aatgaaattt atagtaagag gaaaatccgt cgactttaaa aatcgtgagg
551 gttcaagtcc ctctatcccc
View other 5 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
570 |
551 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.