JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

570 bp

1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggaaaggtt
151   cagaaagtga aaaaaggata ggtgcagaga ctcaacggaa gctgttctaa
201   caaatggagt tagctgcgtt agtagagaaa tctttccatc taaaattccg
251   aaaggataaa gtgaaggata aacgtatata cgtattgaat actatattaa
301   atgattaatg acgactcaac tgaatctgta ttttttatat aaaaatggaa
351   gaattggtgt gaatagattc cacattgaag aaagaatcga atattcattg
401   atcaaataat tcactccata gtctgataga tcttttcaag aattgattaa
451   tcggacgaga ataaagatag agtcccgttc tacatgtcaa tgtcggcaac
501   aatgaaattt atagtaagag gaaaatccgt cgactttaaa aatcgtgagg
551   gttcaagtcc ctctatcccc

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
OY737857.1	nt	Triticum monococcum genome assembly...	57931760 bp	Triticum monococcum	QL-PLN-00-007	570 bp	View
OY737865.1	nt	Triticum monococcum genome assembly...	48899630 bp	Triticum monococcum	QL-PLN-00-007	570 bp	View
KJ815430.1	nt	Coffea mauritiana voucher Kroger et...	1678 bp	Coffea mauritiana	QL-PLN-00-007	570 bp	View
KJ815431.1	nt	Coffea mauritiana voucher Kainulain...	1689 bp	Coffea mauritiana	QL-PLN-00-007	570 bp	View
KJ815438.1	nt	Coffea myrtifolia voucher Kroger et...	1686 bp	Coffea myrtifolia	QL-PLN-00-007	570 bp	View
KJ815427.1	nt	Coffea macrocarpa voucher Razafiman...	1686 bp	Coffea macrocarpa	QL-PLN-00-007	570 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.