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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KF359906.1 nt Oryza meridionalis chloroplast, com... 134553 bp Oryza meridionalis QL-PLN-00-007 615 bp View
KF359907.1 nt Oryza longistaminata chloroplast, c... 134557 bp Oryza longistaminata QL-PLN-00-007 615 bp View
KF359908.1 nt Oryza punctata chloroplast, complet... 134582 bp Oryza punctata QL-PLN-00-007 616 bp View
KF359909.1 nt Oryza minuta chloroplast, complete ... 134596 bp Oryza minuta QL-PLN-00-007 616 bp View
KF359910.1 nt Oryza officinalis chloroplast, comp... 134819 bp Oryza officinalis QL-PLN-00-007 615 bp View
KF359916.1 nt Oryza australiensis chloroplast, co... 135222 bp Oryza australiensis QL-PLN-00-007 614 bp View
KF359917.1 nt Oryza brachyantha chloroplast, comp... 134644 bp Oryza brachyantha QL-PLN-00-007 580 bp View
KF359920.1 nt Oryza granulata chloroplast, comple... 135942 bp Oryza meyeriana var. granulata QL-PLN-00-007 615 bp View
KF428978.1 nt Oryza rufipogon chloroplast, comple... 134557 bp Oryza rufipogon QL-PLN-00-007 615 bp View
KF488257.1 nt Afrocanthium lactescens voucher Ver... 1722 bp Afrocanthium lactescens QL-PLN-00-007 559 bp View
KF488258.1 nt Afrocanthium lactescens voucher Ver... 1702 bp Afrocanthium lactescens QL-PLN-00-007 559 bp View
KF488260.1 nt Afrocanthium siebenlistii voucher V... 1699 bp Afrocanthium siebenlistii QL-PLN-00-007 559 bp View
KF488261.1 nt Afrocanthium siebenlistii voucher V... 1699 bp Afrocanthium siebenlistii QL-PLN-00-007 559 bp View
KF488262.1 nt Bullockia mombazensis voucher Verst... 1694 bp Bullockia mombazensis QL-PLN-00-007 552 bp View
KF488264.1 nt Bullockia setiflora voucher Verstra... 1694 bp Bullockia setiflora QL-PLN-00-007 552 bp View
KF488265.1 nt Fadogia ancylantha voucher Verstrae... 1698 bp Fadogia ancylantha QL-PLN-00-007 552 bp View
KF488269.1 nt Fadogia stenophylla subsp. odorata ... 1670 bp Fadogia stenophylla subsp. odorata QL-PLN-00-007 552 bp View
KF488270.1 nt Fadogia stenophylla subsp. odorata ... 1666 bp Fadogia stenophylla subsp. odorata QL-PLN-00-007 552 bp View
KF488271.1 nt Fadogia triphylla voucher Verstraet... 1666 bp Fadogia triphylla QL-PLN-00-007 552 bp View
KF488273.1 nt Fadogia triphylla var. triphylla vo... 1682 bp Fadogia triphylla var. triphylla QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.