Match details
Record ID: |
KF359916.1 |
Database: |
nt |
Go to original record |
Description: |
Oryza australiensis chloroplast, complete genome. |
Taxon: |
Oryza australiensis |
Original size: |
135222 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46743 |
47356 |
+ |
614 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 ggggcaatcc tgagccaaat ccgtgttttg agaaaacaag cggttctcga
151 actacaaccc aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtgttg ctagcggaac tcccttctaa
251 attagagaaa gaagggcttt cgaaatctaa tacacacgta tagatactgg
301 catagcaaac gattaatcac agaactcata tcataatata tgttctttaa
351 ttctttttta gaatgaaaat aggaatgatt atgaaataga aaattcataa
401 tttttttaga attgttgtga atccattcca atcgaatatt gagtaatcaa
451 atccttcaat tcatagtttt caaatctttt taaaagtgga ttaatcggac
501 gaggataaag agagagtccc attctacatg tcaatactga caacaatgaa
551 atttctagta aaaggaaaat ccgtcgactt tctaagtcgt gagggttcaa
601 gtccctctat cccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.77e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
614 |
595 |
2.77e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.