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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JQ958256.1 nt Vangueriella discolor voucher Jongk... 860 bp Vangueriella discolor QL-PLN-00-007 552 bp View
JQ958257.1 nt Vangueriella rufa voucher Lachenaud... 1679 bp Vangueriella rufa QL-PLN-00-007 552 bp View
JQ958258.1 nt Vangueriella nigerica voucher Jongk... 1712 bp Vangueriella nigerica QL-PLN-00-007 569 bp View
JQ958259.1 nt Vangueriella vanguerioides voucher ... 1704 bp Vangueriella vanguerioides QL-PLN-00-007 552 bp View
JQ958261.1 nt Globulostylis minor voucher Dessein... 1712 bp Globulostylis minor QL-PLN-00-007 551 bp View
JQ958262.1 nt Globulostylis sp. BV-2013d voucher ... 1709 bp Globulostylis uncinula QL-PLN-00-007 556 bp View
JQ958264.1 nt Globulostylis sp. BV-2013b voucher ... 1701 bp Globulostylis rammelooana QL-PLN-00-007 556 bp View
JQ958269.1 nt Globulostylis sp. BV-2013a voucher ... 1701 bp Globulostylis leniochlamys QL-PLN-00-007 556 bp View
JQ958270.1 nt Cuviera acutiflora voucher Dessein ... 1685 bp Cuviera acutiflora QL-PLN-00-007 541 bp View
JQ958271.1 nt Cuviera angolensis subsp. BV-2013 v... 1696 bp Cuviera angolensis subsp. latior QL-PLN-00-007 552 bp View
JQ958272.1 nt Cuviera longiflora voucher Dessein ... 1719 bp Cuviera longiflora QL-PLN-00-007 552 bp View
JQ958273.1 nt Cuviera physinodes voucher Chatrou ... 1696 bp Cuviera physinodes QL-PLN-00-007 552 bp View
JQ958275.1 nt Cuviera subuliflora voucher Dessein... 1698 bp Cuviera subuliflora QL-PLN-00-007 552 bp View
JQ958276.1 nt Cuviera schliebenii voucher Burrows... 1697 bp Cuviera schliebenii QL-PLN-00-007 552 bp View
JQ958277.1 nt Multidentia crassa voucher Dessein ... 1707 bp Multidentia crassa QL-PLN-00-007 552 bp View
JQ958278.1 nt Multidentia dichrophylla voucher De... 1705 bp Multidentia dichrophylla QL-PLN-00-007 558 bp View
JQ958279.1 nt Pygmaeothamnus zeyheri voucher Lema... 1756 bp Pygmaeothamnus zeyheri QL-PLN-00-007 552 bp View
JQ958280.1 nt Cuviera semseii voucher Burrows & B... 1697 bp Cuviera semseii QL-PLN-00-007 552 bp View
JQ958281.1 nt Vangueria agrestis voucher Lejoly 8... 1695 bp Vangueria agrestis QL-PLN-00-007 543 bp View
JQ958282.1 nt Vangueria cinerascens voucher Desse... 1693 bp Vangueria cinerascens QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.