Match details
| Record ID: |
JQ958269.1 |
| Database: |
nt |
Go to original record |
| Description: |
Globulostylis sp. BV-2013a voucher Dessein et al 1448 (BR) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL(UAA)) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
| Taxon: |
Globulostylis leniochlamys |
| Original size: |
1701 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
816 |
1371 |
+ |
556 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 cccactaagt gataactttc aaattcagag aaaccctgga attaataaaa
101 aggggcaatc ctgagccaaa tcctgttttc cgaaaccaaa gcaaaggttc
151 agaaagtgaa aaagggatag gtgcagagac tcgatggaag ttgttctaac
201 aaatggagtt ggctgcgtta gtaaagaaat ctttccatcg aaaattccga
251 aaggataaaa cgtatacgta ttgaatacta tatcaaatga ttaatgacga
301 ctcgactgaa tccgtatttt ttatatgaaa acggaagaat tggtgtgaat
351 agattccaca ttgaagaaag aatcgaatat tcattgatta aatgattcac
401 tccatagtct gatagatctt ttcaagaatt gattaatcgg acgagaataa
451 agatagagtc ccgttctaca tgtcaatgtc ggcaacaatg aaatttatag
501 taagaggaaa atccgtcgac tttaaaaatc gtgagggttc aagtccctct
551 atcccc
View other 2 matches with an identical amplicon
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.50e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
556 |
537 |
2.50e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
